How does the gut work?

Gut Microbiome

06 May 2025

A doctor consulting a patient about their gut health

The gut is a complex and vital part of the human body and is often linked to general well-being. But what exactly is the gut, and how does it function? Is it the same as the digestive system? In this article, we will answer these questions, looking into how the gut works, its role in digestion and nutrient absorption, and why it is essential for overall health. We will also look at how the gut can influence different aspects of our health, from immunity to mental well-being, and provide answers to some of the most frequently asked questions about the gut.

Key Takeaways

Here are the key takeaways from this article about how the gut works:

  • The Gut and Digestive System: The gut includes the stomach and intestines. While it is a crucial part of the digestive system, the digestive system also includes other organs like the mouth, oesophagus, liver, and pancreas.

  • Importance of Digestion: Digestion is vital for breaking down food into smaller components such as amino acids, fatty acids, and simple sugars, which the body can absorb and use for energy, growth, and cell repair.

  • Digestive Organs and Their Functions: Key organs in the digestive system include the oesophagus, stomach, small intestine, large intestine, rectum and anus.

  • Peristalsis: Peristalsis is the wave-like muscle contractions that move food and liquids through the digestive tract, mixing them with digestive juices and aiding in nutrient absorption.

  • Role of Bile and Small Intestine: Bile, which is produced by the liver and stored in the gallbladder, neutralises stomach acid and emulsifies fats in the small intestine.

Is the gut the same as the digestive system?

The gut is another term for the gastrointestinal tract, which includes the stomach and intestines. While it is a significant part of the digestive system, ‘the gut’ refers to the portions of the alimentary canal responsible for digesting food and absorbing nutrients. The digestive system involves the entire process of digestion, including organs such as the mouth, oesophagus, liver, and pancreas. While the gut is a critical component of the digestive system, they are not exactly the same.

Why is digestion important?

Digestion is important because your body requires nutrients from food and drink to function correctly and maintain health. Nutrients such as proteins, fats, carbohydrates, vitamins, minerals, and water are essential for a number of different bodily functions. The digestive system breaks these nutrients down into smaller components that your body can absorb and use. Proteins are broken down into amino acids, fats into fatty acids and glycerol, and carbohydrates into simple sugars. Digestion helps to provide energy, support growth, and facilitate cell repair [1].

What organs does the digestive system consist of?

The digestive system consists of several key organs, each playing a vital role in the process of digestion. These organs include [2]:

  • Gullet (oesophagus): A muscular tube that transports food from the mouth to the stomach.

  • Stomach: A hollow organ that mixes food with digestive juices, breaking it down into a semi-liquid form.

  • Small intestine: A long, coiled tube where most digestion and nutrient absorption occur.

  • Large intestine: Absorbs water and electrolytes, forming and storing solid waste.

  • Rectum: The final section of the large intestine, where waste is stored before being expelled from the body.

How does the process of digestion work in your body?

The process of digestion involves several stages, starting from the moment you swallow food. Here’s how it works [3]:

  1. Swallowing: When you swallow food, it travels down the oesophagus to the stomach. This is where the initial breakdown of food begins.

  2. Stomach: In the stomach, food is mixed with digestive juices where it is turned into a semi-liquid form. This is crucial for the next stage of digestion.

  3. Small Intestine: The food moves into the small intestine, where most nutrient and mineral absorption occurs. Enzymes and bile break down the food further, allowing nutrients to pass into the bloodstream.

  4. Large Intestine (Colon): The remaining digested food enters the colon, where water is absorbed. This transforms the liquid waste into a more solid form.

  5. Rectum: The solid waste matter is held in the rectum, the final part of the large intestine. Nerves and muscles in the rectum work together to hold the waste until you are ready to pass it.

  6. Anus: The anus is the opening at the end of the digestive tract. It contains a ring of muscle called the sphincter, which helps control when you empty your bowels, ensuring waste is expelled at the appropriate time.

Video: How Your Digestive System Works

In the video below by TED-Ed, they provide an easy-to-digest visual explanation of how your digestive system works:

What is peristalsis?

Peristalsis is the involuntary, wave-like muscle contractions that occur in the digestive tract. These contractions move food and liquids through the digestive system, starting from the oesophagus and continuing through the stomach, small intestine, and large intestine. Peristalsis is crucial for ensuring that food is mixed with digestive juices and that nutrients are properly absorbed as the food moves through the digestive tract. As well as this, it helps in the movement of waste towards the rectum.

How does your stomach help the digestive process?

The stomach plays a vital role in the digestive process by producing hydrochloric acid, which kills many harmful microorganisms that may have been ingested with food. The acidic environment created by this acid is ideal for the stomach's enzymes to function effectively, particularly in breaking down proteins. This is where protein digestion begins, setting up further digestion and nutrient absorption in the intestines.

How does bile help your gut?

After food leaves the stomach it travels to the small intestine. The enzymes in the small intestine require alkaline conditions to work effectively, but the food arriving from the stomach is acidic. Bile is a substance produced by the liver and stored in the gallbladder, which addresses this issue. It is released into the small intestine via the bile duct, where it has two functions. It neutralises stomach acid, creating the alkaline conditions needed, and it emulsifies fats. By breaking down large fat droplets into smaller ones, bile increases the surface area for lipase enzymes to work on, which helps with the digestion of fats.

How does your small intestine help with absorption of digested food?

Absorption involves the movement of digested food molecules through the intestinal wall into the bloodstream. The small intestine is the primary area for this absorption. It has a large internal surface area, which allows for quick and efficient absorption due to numerous finger-like tendrils called villi. Each villus contains blood capillaries and a lacteal, surrounded by the intestinal lining. The rich blood supply around the villi quickly transports absorbed nutrients away. This allows for continuous absorption of nutrients into the blood.

How does your small intestine help with digestion of food?

At the end of the small intestine, the remaining material in the gut includes water, bacteria (both living and dead), cells from the gut lining, and indigestible substances such as cellulose from plant cell walls. The large intestine absorbs most of the remaining water, leaving behind semi-solid waste material known as faeces. Egestion occurs when faeces are passed from the body through the anus.

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Final Final Thoughts from Yusra

Understanding how the gut works is key to appreciating its impact on your overall health. While it forms a major part of the digestive system, the gut specifically refers to the organs responsible for digesting food and absorbing nutrients. From the movement of food through the digestive tract to the role of bile, enzymes and beneficial bacteria, each part of the gut plays a specific role in maintaining balance in the body. Good gut health not only supports digestion, but also contributes to a strong immune system and may even influence your mental wellbeing. 

Sources

[1] Your Digestive System & How it Works - NIDDK

[2] How our digestive system works and keeping it healthy | Great Ormond Street Hospital

[3] The bowel and lymph nodes | Macmillan Cancer Support

Author
Scott Weaver Medical Content Writer

Scott Weaver

Medical Content Writer

Scott is a professional content writer with more than four years of experience specialising in medical content. He always aims to produce clear, informative and reliable health and well-being-based content that readers can trust. He has covered a wide range of topics on a number of different medical conditions and treatments, both conventional and holistic. The aim of Scott’s work is to provide readers with the information they need to get a better understanding of their health and well-being. Outside of work, Scott enjoys cooking, travelling and watching sports – especially football, cricket and American football.
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Medical Reviewer
Yusra Serdaroglu Aydin - Head of Nutrition & Registered Dietitian at Vivere

Yusra Serdaroglu Aydin

Head of Nutrition and Registered Dietitian

Yusra is a registered dietitian with a multidisciplinary background in nutrition, food engineering, and culinary arts. She has a strong foundation in personalised nutrition, microbiome research, and food innovation. At Vivere, she leads the development and continuous improvement of nutrition-focused products and services. Her work involves aligning scientific research with product strategy, enhancing user experience, and supporting cross-functional collaboration. With experience in business development and training, she brings a practical, science-based approach to creating effective, health-oriented solutions.

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